TSS: Rfhg 216725.1: Difference between revisions

Revision as of 02:40, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_216725.1
Species:	human
Chr:	chr19

Start:	57363468
End:	57363598
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3076757,EH38E1965826)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000595335.5:0 ENST00000282282.4:0 ENST00000543226.2:0 ENST00000596755.1:0 AF291676:0 AF058918:0 AK055662:0 BC008889:0 BC032809:0 BC042681:0 BC064426:0 AL832545:0 AK291464:0
GeneID:	10597 284306
HGNC/MGI_ID:	HGNC:10710 HGNC:26432
UniProt_ID:	M0QZZ8 Q6IBE5 Q8IVP9
Nearer transcript ids and distances:

Gene_name:	TRAPPC2B
Gene_symbol:	TRAPPC2B ZNF547
Gene_synonyms:	FLJ31100 MIP-2A SEDLP1
Gene_source:	HGNC:10710 HGNC:26432

TATA-Box annotation

Distance to TSS:	-18
Nearest PromoterID:	NM_001355204
Entrez ID:	10597
Nearest Unigene:	Hs.446620
Nearest Refseq:	NM_001355204
Nearest Ensembl:	ENSG00000256060
Gene Name:	TRAPPC2B
Gene Alias:	MIP-2A\|SEDLP\|SEDLP1\|TRAPPC2P1
Gene Type:	protein-coding
CpG%:	0.084615
GC%:	0.564885
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:10710 HGNC:26432
+|methods=TIF-seq2{{!}}ReCappable-seq{{!}}oligo_capping{{!}}CAGE{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}C1CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000256060
 |nearest_promoter_id=NM_001355204
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA615891{{!}}PRJNA548673{{!}}PRJNA401781{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=57363468
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000595335.5 ENST00000282282.4 ENST00000543226.2 ENST00000596755.1 AF291676 AF058918 AK055662 BC008889 BC032809 BC042681 BC064426 AL832545 AK291464
-|tss_cluster_detected=12
+|tss_cluster_detected=10
 |tss_id=rfhg_216725.1
 |tss_score=1
 |uniprot_id=M0QZZ8 Q6IBE5 Q8IVP9
 }}