TSS: Rfhg 219181.1: Difference between revisions

Revision as of 03:22, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_219181.1
Species:	human
Chr:	chr20

Start:	31475265
End:	31475314
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3291108,EH38E2106110)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000201979.3:0 AK313060:0 BC039813:0 AF152863:0
GeneID:	28954
HGNC/MGI_ID:	HGNC:15922
UniProt_ID:	O75628
Nearer transcript ids and distances:

Gene_name:	REM1
Gene_symbol:	REM1
Gene_synonyms:	GES
Gene_source:	HGNC:15922

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_014012
Entrez ID:	28954
Nearest Unigene:	Hs.247729
Nearest Refseq:	NM_014012
Nearest Ensembl:	ENSG00000088320
Gene Name:	REM1
Gene Alias:	GD:REM\|GES
Gene Type:	protein-coding
CpG%:	0.020408
GC%:	0.680000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:15922
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000088320
 |nearest_promoter_id=NM_014012
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=31475265