TSS: Rfhg 227431.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:1842 | |hgnc_mgi_id=HGNC:1842 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000185837 | |nearest_ensembl=ENSG00000185837 | ||
|nearest_promoter_id=NR_024483 | |nearest_promoter_id=NR_024483 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=17159348 | |start=17159348 |
Latest revision as of 05:44, 8 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D3350725,EH38E2148471) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -26 |
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Nearest PromoterID: | NR_024483 |
Entrez ID: | 100130717 |
Nearest Unigene: | Hs.660066 |
Nearest Refseq: | NR_024482 |
Nearest Ensembl: | ENSG00000185837 |
Gene Name: | HDHD5-AS1 |
Gene Alias: | CECR4|CECR5-AS1|NCRNA00017 |
Gene Description: | HDHD5 antisense RNA 1 |
Gene Type: | ncRNA |
CpG%: | 0.129032 |
GC%: | 0.625000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.