TSS: Rfhg 2278.1: Difference between revisions

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|gene_type=pseudo
|gene_type=pseudo
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=NETCAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_027504
|nearest_promoter_id=NR_027504
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|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=PRJNA4843412
|species=human
|species=human
|start=16645486
|start=16645486

Revision as of 05:50, 8 December 2023

Basic information about the TSS


TSS ID:rfhg_2278.1
Species:human
Chr:chr1
Start:16645486
End:16645491
Strand:-
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2131835,EH38E1322608)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:MST1P2
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-86
    Nearest PromoterID:NR_027504
    Entrez ID:11209
    Nearest Unigene:Hs.349110
    Nearest Refseq:NR_027504
    Nearest Ensembl:
    Gene Name:MST1P2
    Gene Alias:MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3
    Gene Type:pseudo
    CpG%:0.000000
    GC%:0.666667
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):