TSS: Rfhg 228449.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:41238 | |hgnc_mgi_id=HGNC:41238 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000203280 | |nearest_ensembl=ENSG00000203280 | ||
|nearest_promoter_id=NR_038941 | |nearest_promoter_id=NR_038941 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=25112706 | |start=25112706 | ||
Latest revision as of 06:02, 8 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D3358235,EH38E2153995) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NR_038941 |
| Entrez ID: | 100128531 |
| Nearest Unigene: | Hs.662126 |
| Nearest Refseq: | NR_038941 |
| Nearest Ensembl: | ENSG00000203280 |
| Gene Name: | LOC100128531 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128531 |
| Gene Type: | ncRNA |
| CpG%: | 0.071429 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.