TSS: Rfhg 230508.1: Difference between revisions

Revision as of 06:39, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_230508.1
Species:	human
Chr:	chr22

Start:	39399744
End:	39399806
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3372459,EH38E2164659)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000473613.5:0 ENST00000216160.11:0 ENST00000331454.3:0 AK296314:0 BC038582:0 AF425640:0 AK312456:0 U49928:0 AK291668:0 AK316004:0 AK308903:0
GeneID:	10454
HGNC/MGI_ID:	HGNC:18157
UniProt_ID:	A8K6K3 B7Z3S5 B7Z9N9 Q15750
Nearer transcript ids and distances:

Gene_name:	TAB1
Gene_symbol:	TAB1
Gene_synonyms:
Gene_source:	HGNC:18157

TATA-Box annotation

Distance to TSS:	-5
Nearest PromoterID:	NM_006116
Entrez ID:	10454
Nearest Unigene:	Hs.507681
Nearest Refseq:	NM_006116
Nearest Ensembl:	ENSG00000100324
Gene Name:	TAB1
Gene Alias:	3'-Tab1\|MAP3K7IP1
Gene Type:	protein-coding
CpG%:	0.096774
GC%:	0.730159
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:18157
+|methods=NETCAGE{{!}}CAGE{{!}}C1CAGE{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000100324
 |nearest_promoter_id=NM_006116
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673
 |species=human
 |start=39399744
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000473613.5 ENST00000216160.11 ENST00000331454.3 AK296314 BC038582 AF425640 AK312456 U49928 AK291668 AK316004 AK308903
-|tss_cluster_detected=13
+|tss_cluster_detected=10
 |tss_id=rfhg_230508.1
 |tss_score=1
 |uniprot_id=A8K6K3 B7Z3S5 B7Z9N9 Q15750
 }}