TSS: Rfhg 235889.1: Difference between revisions

Revision as of 08:11, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_235889.1
Species:	human
Chr:	chrX

Start:	48696584
End:	48696588
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4282601,EH38E2754095)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SUV39H1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-148
Nearest PromoterID:	NM_003173
Entrez ID:	6839
Nearest Unigene:	Hs.522639
Nearest Refseq:	NM_003173
Nearest Ensembl:	ENSG00000101945
Gene Name:	SUV39H1
Gene Alias:	H3-K9-HMTase 1\|KMT1A\|MG44\|SUV39H
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000101945
 |nearest_promoter_id=NM_003173
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=48696584