TSS: Rfhg 236065.1: Difference between revisions

Revision as of 08:14, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_236065.1
Species:	human
Chr:	chrX

Start:	49322058
End:	49322058
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000442437.2:-1
GeneID:	729396
HGNC/MGI_ID:	HGNC:17778
UniProt_ID:	A6NER3
Nearer transcript ids and distances:

Gene_name:	GAGE12G
Gene_symbol:	GAGE12J
Gene_synonyms:	OTTHUMG00000024137
Gene_source:	HGNC:17778

TATA-Box annotation

Distance to TSS:	24
Nearest PromoterID:	NM_001098409
Entrez ID:	645073
Nearest Unigene:	Hs.460641
Nearest Refseq:	NM_001098409
Nearest Ensembl:	ENSG00000215269
Gene Name:	GAGE12G
Gene Alias:	AL4\|CT4.7\|GAGE-12G
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:17778
+|methods=TSS_database
 |nearest_ensembl=ENSG00000215269
 |nearest_promoter_id=NM_001098409
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=49322058