TSS: Rfhg 236175.1: Difference between revisions

Revision as of 08:16, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_236175.1
Species:	human
Chr:	chrX

Start:	52265886
End:	52265931
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000669760.1:0 ENST00000654180.1:0
GeneID:	105377209
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR8088
Gene_symbol:	LOC105377209
Gene_synonyms:
Gene_source:	EntrezGene:105377209

TATA-Box annotation

Distance to TSS:	70734
Nearest PromoterID:	NR_107055
Entrez ID:	102466880
Nearest Unigene:
Nearest Refseq:	NR_107055
Nearest Ensembl:	ENSG00000275335
Gene Name:	MIR8088
Gene Alias:	hsa-mir-8088
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.391304
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000275335
 |nearest_promoter_id=NR_107055
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=52265886