TSS: Rfhg 238698.1: Difference between revisions

Revision as of 09:02, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_238698.1
Species:	human
Chr:	chrX

Start:	119399307
End:	119399401
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4306591,EH38E2766116)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000217909.8:0 ENST00000488158.5:0 AK094254:0 BC071871:0 AK303932:0 AK091304:0 AK292035:0
GeneID:	203427
HGNC/MGI_ID:	HGNC:30557
UniProt_ID:	A8K7M0 B4E1P8 Q8WUT9
Nearer transcript ids and distances:

Gene_name:	SLC25A43
Gene_symbol:	SLC25A43
Gene_synonyms:
Gene_source:	HGNC:30557

TATA-Box annotation

Distance to TSS:	18
Nearest PromoterID:	NM_145305
Entrez ID:	203427
Nearest Unigene:	Hs.496658
Nearest Refseq:	NM_145305
Nearest Ensembl:	ENSG00000077713
Gene Name:	SLC25A43
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.127660
GC%:	0.831579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:30557
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000077713
 |nearest_promoter_id=NM_145305
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=119399307
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000217909.8 ENST00000488158.5 AK094254 BC071871 AK303932 AK091304 AK292035
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_238698.1
 |tss_score=1
 |uniprot_id=A8K7M0 B4E1P8 Q8WUT9
 }}