TSS: Rfhg 240516.1: Difference between revisions

Revision as of 09:36, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_240516.1
TSS ID(Version3):	hg_200999.1
Species:	human
Chr:	chrX

Start:	154367958
End:	154368070
Strand:	-

Source datasets

FANTOM5|DRA013844

Protocol

CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4322419,EH38E2774217)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	FLNA
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6620
Nearest PromoterID:	NM_001110556
Entrez ID:	2316
Nearest Unigene:	Hs.195464
Nearest Refseq:	NM_001456
Nearest Ensembl:	ENSG00000196924
Gene Name:	FLNA
Gene Alias:	ABP-280\|ABPX\|CSBS\|CVD1\|FGS2\|FLN\|FLN-A\|FLN1\|FMD\|MNS\|NHBP\|OPD\|OPD1\|OPD2\|XLVD\|XMVD
Gene Type:	protein-coding
CpG%:	0.008929
GC%:	0.592920
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000196924
 |nearest_promoter_id=NM_001110556
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA013844
 |species=human
 |start=154367958
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=
-|tss_cluster_detected=0
+|tss_cluster_detected=2
 |tss_id=rfhg_240516.1
 |tss_id_v3=hg_200999.1