TSS: Rfhg 240713.1: Difference between revisions

Revision as of 09:40, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_240713.1
TSS ID(Version3):	hg_201083.1 hg_201084.1
Species:	human
Chr:	chrX

Start:	155071065
End:	155071173
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4322925,EH38E2774593)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000369484.8:0 ENST00000369476.8:0 ENST00000482244.5:0
GeneID:	100272147 4515
HGNC/MGI_ID:	HGNC:35428 HGNC:7423
UniProt_ID:	P56277 P56278
Nearer transcript ids and distances:

Gene_name:	CMC4
Gene_symbol:	CMC4 MTCP1
Gene_synonyms:	P13MTCP1 P8MTCP1 TCL1C p8 p8MTCP1
Gene_source:	HGNC:35428 HGNC:7423

TATA-Box annotation

Distance to TSS:	17
Nearest PromoterID:	NM_001018024
Entrez ID:	100272147
Nearest Unigene:	Hs.6917
Nearest Refseq:	NM_001018024
Nearest Ensembl:	ENSG00000182712
Gene Name:	CMC4
Gene Alias:	C6.1B\|MTCP1\|MTCP1B\|MTCP1NB\|p8\|p8MTCP1
Gene Type:	protein-coding
CpG%:	0.148148
GC%:	0.788991
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:35428 HGNC:7423
+|methods=CAGE{{!}}TIF-seq2{{!}}RAMPAGE{{!}}oligo_capping{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}C1CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000182712
 |nearest_promoter_id=NM_001018024
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=155071065
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000369484.8 ENST00000369476.8 ENST00000482244.5
+|tss_cluster_detected=11
 |tss_id=rfhg_240713.1
 |tss_id_v3=hg_201083.1;hg_201084.1