TSS: Rfhg 240761.1: Difference between revisions

Revision as of 09:41, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_240761.1
Species:	human
Chr:	chrY

Start:	2935375
End:	2935427
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4323365,EH38E2774811)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000155093.8:0 ENST00000625061.3:0 AK301061:0
GeneID:	7544
HGNC/MGI_ID:	HGNC:12870
UniProt_ID:	P08048
Nearer transcript ids and distances:

Gene_name:	ZFY
Gene_symbol:	ZFY
Gene_synonyms:	ZNF911
Gene_source:	HGNC:12870

TATA-Box annotation

Distance to TSS:	20
Nearest PromoterID:	NM_001369702
Entrez ID:	7544
Nearest Unigene:	Hs.522845
Nearest Refseq:	NM_003411
Nearest Ensembl:	ENSG00000067646
Gene Name:	ZFY
Gene Alias:	ZNF911
Gene Type:	protein-coding
CpG%:	0.115385
GC%:	0.716981
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:12870
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000067646
 |nearest_promoter_id=NM_001369702
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=2935375
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000155093.8 ENST00000625061.3 AK301061
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_240761.1
 |tss_score=1
 |uniprot_id=P08048
 }}