TSS: Rfhg 240764.1: Difference between revisions

Revision as of 09:41, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_240764.1
Species:	human
Chr:	chrY

Start:	3002986
End:	3002987
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4323408,EH38E2774842)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_046502.1:9
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC00278
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-10
Nearest PromoterID:	NR_046502
Entrez ID:	100873962
Nearest Unigene:	Hs.267256
Nearest Refseq:	NR_046502
Nearest Ensembl:	ENSG00000231535
Gene Name:	LINC00278
Gene Alias:	NCRNA00278
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=C1CAGE
 |nearest_ensembl=ENSG00000231535
 |nearest_promoter_id=NR_046502
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282
 |species=human
 |start=3002986