TSS: Rfhg 2532.1: Difference between revisions

Revision as of 10:09, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_2532.1
TSS ID(Version3):	hg_10654.1
Species:	human
Chr:	chr1

Start:	19312069
End:	19312149
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

9

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2134415,EH38E1324469)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000235835.8:0 ENST00000330072.9:0 ENST00000492217.1:0 BC004111:0 BC011586:0 BC013996:0 AF026947:0 AK225267:0 BC007352:0 BC012171:0 EU794591:0 Y16675:0 BC010852:0 AK303131:0 AK310609:0
GeneID:	8574
HGNC/MGI_ID:	HGNC:389
UniProt_ID:	B4DZX4 H3BLU7 V9HWA2
Nearer transcript ids and distances:

Gene_name:	AKR7A2
Gene_symbol:	AKR7A2
Gene_synonyms:	AFAR
Gene_source:	HGNC:389

TATA-Box annotation

Distance to TSS:	37
Nearest PromoterID:	NM_003689
Entrez ID:	8574
Nearest Unigene:	Hs.571886
Nearest Refseq:	NM_003689
Nearest Ensembl:	ENSG00000053371
Gene Name:	AKR7A2
Gene Alias:	AFAR\|AFAR1\|AFB1-AR1\|AKR7
Gene Type:	protein-coding
CpG%:	0.187500
GC%:	0.728395
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:389
+|methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000053371
 |nearest_promoter_id=NM_003689
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673
 |species=human
 |start=19312069
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000235835.8 ENST00000330072.9 ENST00000492217.1 BC004111 BC011586 BC013996 AF026947 AK225267 BC007352 BC012171 EU794591 Y16675 BC010852 AK303131 AK310609
+|tss_cluster_detected=9
 |tss_id=rfhg_2532.1
 |tss_id_v3=hg_10654.1