TSS: Rfhg 27130.1: Difference between revisions

Revision as of 10:41, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_27130.1
Species:	human
Chr:	chr2

Start:	61471164
End:	61471177
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3130305,EH38E2002000)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000603652.2:11
GeneID:
HGNC/MGI_ID:	HGNC:55262
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	USP34
Gene_symbol:	USP34-DT
Gene_synonyms:
Gene_source:	HGNC:55262

TATA-Box annotation

Distance to TSS:	-83
Nearest PromoterID:	NM_014709
Entrez ID:	9736
Nearest Unigene:	Hs.644708
Nearest Refseq:	NM_014709
Nearest Ensembl:	ENSG00000115464
Gene Name:	USP34
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.076923
GC%:	0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:55262
+|methods=CAGE
 |nearest_ensembl=ENSG00000115464
 |nearest_promoter_id=NM_014709
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=61471164