TSS: Rfhg 27975.1: Difference between revisions

Revision as of 10:57, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_27975.1
Species:	human
Chr:	chr2

Start:	70258161
End:	70258172
Strand:	-

Source datasets

ENCODE

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3138304,EH38E2007916)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PCYOX1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	29
Nearest PromoterID:	NM_016297
Entrez ID:	51449
Nearest Unigene:	Hs.567502
Nearest Refseq:	NM_016297
Nearest Ensembl:	ENSG00000116005
Gene Name:	PCYOX1
Gene Alias:	PCL1
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.833333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000116005
 |nearest_promoter_id=NM_016297
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=ENCODE
 |species=human
 |start=70258161