TSS: Rfhg 31660.1: Difference between revisions

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|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000264075
|nearest_ensembl=ENSG00000264075
|nearest_promoter_id=NR_039944
|nearest_promoter_id=NR_039944
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=127423160
|start=127423160

Revision as of 12:02, 8 December 2023

Basic information about the TSS

TSS ID:rfhg_31660.1
Species:human
Chr:chr2
Start:127423160
End:127423164
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D3175810,EH38E2031287)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LY498079:-403
LY498848:-403
LY499394:-403
MS880709:-403
MS997145:-403
MA806288:-403
MA823179:-403
MB473329:-403
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:MIR4783
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:456
    Nearest PromoterID:NR_039944
    Entrez ID:100616187
    Nearest Unigene:
    Nearest Refseq:NR_039944
    Nearest Ensembl:ENSG00000264075
    Gene Name:MIR4783
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.600000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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