TSS: Rfhg 31746.1: Difference between revisions

Revision as of 12:04, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_31746.1
Species:	human
Chr:	chr2

Start:	127811152
End:	127811192
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3176250,EH38E2031601)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000322313.9:0 ENST00000436787.5:0 ENST00000393006.5:0 ENST00000409658.7:0 BC068484:0 AK002156:0 AK223319:0 BC013990:0 BC005401:0
GeneID:	55339
HGNC/MGI_ID:	HGNC:25651
UniProt_ID:	C9J8B4 Q9C0J8
Nearer transcript ids and distances:

Gene_name:	WDR33
Gene_symbol:	WDR33
Gene_synonyms:	FLJ11294 NET14 WDC146
Gene_source:	HGNC:25651

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_001006623
Entrez ID:	55339
Nearest Unigene:	Hs.554831
Nearest Refseq:	NM_018383
Nearest Ensembl:	ENSG00000136709
Gene Name:	WDR33
Gene Alias:	NET14\|WDC146
Gene Type:	protein-coding
CpG%:	0.125000
GC%:	0.707317
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25651
+|methods=C1CAGE{{!}}NETCAGE{{!}}CAGE{{!}}TIF-seq2{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}STRIPE-seq{{!}}oligo_capping
 |nearest_ensembl=ENSG00000136709
 |nearest_promoter_id=NM_001006623
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA597322
 |species=human
 |start=127811152
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000322313.9 ENST00000436787.5 ENST00000393006.5 ENST00000409658.7 BC068484 AK002156 AK223319 BC013990 BC005401
-|tss_cluster_detected=15
+|tss_cluster_detected=11
 |tss_id=rfhg_31746.1
 |tss_score=1
 |uniprot_id=C9J8B4 Q9C0J8
 }}