TSS: Rfhg 3659.1: Difference between revisions

Revision as of 13:30, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_3659.1
TSS ID(Version3):	hg_11121.1 hg_11120.1 hg_11122.1
Species:	human
Chr:	chr1

Start:	25906399
End:	25906492
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

12

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2141346,EH38E1330009)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000426559.6:0 ENST00000455785.7:0 ENST00000465604.1:0 ENST00000580971.1:0 AK303692:0 J04991:0 X53305:0 Z11566:0 AK054594:0 AB209282:0 BX647885:0 BC014353:0 BC082228:0 AK311801:0 D28428:0
GeneID:	100500808 3925
HGNC/MGI_ID:	HGNC:38911 HGNC:6510
UniProt_ID:	A0A140VJW2 P16949 Q59G27 Q96CE4
Nearer transcript ids and distances:

Gene_name:	MIR3917
Gene_symbol:	MIR3917 STMN1
Gene_synonyms:	FLJ32206 Lag OP18 PP17 PP19 PR22 SMN hsa-mir-3917
Gene_source:	HGNC:38911 HGNC:6510

TATA-Box annotation

Distance to TSS:	9
Nearest PromoterID:	NR_037481
Entrez ID:	100500808
Nearest Unigene:
Nearest Refseq:	NR_037481
Nearest Ensembl:	ENSG00000283938
Gene Name:	MIR3917
Gene Alias:	mir-3917
Gene Type:	ncRNA
CpG%:	0.118280
GC%:	0.670213
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:38911 HGNC:6510
+|methods=CAGE{{!}}SLIC_CAGE{{!}}NETCAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}TIF-seq2{{!}}STRIPE-seq{{!}}C1CAGE
 |nearest_ensembl=ENSG00000283938
 |nearest_promoter_id=NR_037481
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA597322{{!}}PRJDB5282
 |species=human
 |start=25906399
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000426559.6 ENST00000455785.7 ENST00000465604.1 ENST00000580971.1 AK303692 J04991 X53305 Z11566 AK054594 AB209282 BX647885 BC014353 BC082228 AK311801 D28428
+|tss_cluster_detected=12
 |tss_id=rfhg_3659.1
 |tss_id_v3=hg_11121.1;hg_11120.1;hg_11122.1