TSS: Rfhg 39340.1: Difference between revisions

Revision as of 14:23, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_39340.1
TSS ID(Version3):	hg_25518.1
Species:	human
Chr:	chr2

Start:	219498825
End:	219498931
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

16

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000684669.1:0 ENST00000683382.1:0 ENST00000682340.1:0 ENST00000684274.1:0 ENST00000683241.1:0 ENST00000684227.1:0 ENST00000683746.1:0 ENST00000683591.1:0 ENST00000684562.1:0 ENST00000682058.1:0 ENST00000682435.1:0 ENST00000683617.1:0 ENST00000684242.1:0 ENST00000635609.2:0 ENST00000683964.1:0 ENST00000684412.1:0 ENST00000373917.7:0 ENST00000682102.1:0 ENST00000455657.6:0 ENST00000682576.1:0 ENST00000684334.1:0 ENST00000683598.1:0 ENST00000683131.1:0 ENST00000683946.1:0 ENST00000435316.6:0 ENST00000313597.10:0 ENST00000684729.1:0 ENST00000683203.1:0 ENST00000683864.1:0 ENST00000682481.1:0 ENST00000358215.8:0 ENST00000480506.6:0 ENST00000443704.5:0 ENST00000373908.5:0 ENST00000622191.2:0 ENST00000683752.1:0 ENST00000341142.8:0 ENST00000682443.1:0 AK000999:0 AK290671:0 AK222951:0 AK022578:0 AK296193:0 BC007456:0 GQ891444:0
GeneID:	29926
HGNC/MGI_ID:	HGNC:22923
UniProt_ID:	A0A384MDS7 B4DJR0 C9J255 C9JAH0 F8WD54 Q96IJ6
Nearer transcript ids and distances:

Gene_name:	GMPPA
Gene_symbol:	GMPPA
Gene_synonyms:
Gene_source:	HGNC:22923

TATA-Box annotation

Distance to TSS:	-13
Nearest PromoterID:	NM_013335
Entrez ID:	29926
Nearest Unigene:	Hs.27059
Nearest Refseq:	NM_013335
Nearest Ensembl:	ENSG00000144591
Gene Name:	GMPPA
Gene Alias:	AAMR
Gene Type:	protein-coding
CpG%:	0.094340
GC%:	0.598131
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:22923
+|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}oligo_capping{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}NETCAGE{{!}}RAMPAGE{{!}}TIF-seq2{{!}}STRIPE-seq{{!}}C1CAGE
 |nearest_ensembl=ENSG00000144591
 |nearest_promoter_id=NM_013335
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJDB5282
 |species=human
 |start=219498825
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000684669.1 ENST00000683382.1 ENST00000682340.1 ENST00000684274.1 ENST00000683241.1 ENST00000684227.1 ENST00000683746.1 ENST00000683591.1 ENST00000684562.1 ENST00000682058.1 ENST00000682435.1 ENST00000683617.1 ENST00000684242.1 ENST00000635609.2 ENST00000683964.1 ENST00000684412.1 ENST00000373917.7 ENST00000682102.1 ENST00000455657.6 ENST00000682576.1 ENST00000684334.1 ENST00000683598.1 ENST00000683131.1 ENST00000683946.1 ENST00000435316.6 ENST00000313597.10 ENST00000684729.1 ENST00000683203.1 ENST00000683864.1 ENST00000682481.1 ENST00000358215.8 ENST00000480506.6 ENST00000443704.5 ENST00000373908.5 ENST00000622191.2 ENST00000683752.1 ENST00000341142.8 ENST00000682443.1 AK000999 AK290671 AK222951 AK022578 AK296193 BC007456 GQ891444
+|tss_cluster_detected=16
 |tss_id=rfhg_39340.1
 |tss_id_v3=hg_25518.1