TSS: Rfhg 41002.1: Difference between revisions

Revision as of 14:53, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_41002.1
Species:	human
Chr:	chr2

Start:	237762606
End:	237762624
Strand:	-

Source datasets

DBTSS

Protocol

TSS-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3263156,EH38E2087717)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RBM44
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-36130
Nearest PromoterID:	NM_001080504
Entrez ID:	375316
Nearest Unigene:	Hs.607265
Nearest Refseq:	NM_198852
Nearest Ensembl:	ENSG00000177483
Gene Name:	RBM44
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.578947
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=TSS-seq
 |nearest_ensembl=ENSG00000177483
 |nearest_promoter_id=NM_001080504
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DBTSS
 |species=human
 |start=237762606