TSS: Rfhg 45572.1: Difference between revisions

Revision as of 16:17, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_45572.1
Species:	human
Chr:	chr3

Start:	51420967
End:	51420967
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK023239:17
GeneID:	9730
HGNC/MGI_ID:	HGNC:30911
UniProt_ID:	B3KN11
Nearer transcript ids and distances:

Gene_name:	RBM15B
Gene_symbol:	DCAF1
Gene_synonyms:	KIAA0800 MGC102804
Gene_source:	HGNC:30911

TATA-Box annotation

Distance to TSS:	29682
Nearest PromoterID:	NM_013286
Entrez ID:	29890
Nearest Unigene:	Hs.118738
Nearest Refseq:	NM_013286
Nearest Ensembl:	ENSG00000259956
Gene Name:	RBM15B
Gene Alias:	HUMAGCGB\|HsOTT3\|OTT3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:30911
+|methods=TSS_database
 |nearest_ensembl=ENSG00000259956
 |nearest_promoter_id=NM_013286
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=51420967