TSS: Rfhg 48639.1: Difference between revisions

Revision as of 17:13, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_48639.1
Species:	human
Chr:	chr3

Start:	112640478
End:	112640491
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3469238,EH38E2227434)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF339356:462 MA574933:462
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CCDC80
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	659
Nearest PromoterID:	NM_199511
Entrez ID:	151887
Nearest Unigene:	Hs.477128
Nearest Refseq:	NM_199511
Nearest Ensembl:	ENSG00000091986
Gene Name:	CCDC80
Gene Alias:	CL2\|DRO1\|SSG1\|URB\|okuribin
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000091986
 |nearest_promoter_id=NM_199511
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=112640478