TSS: Rfhg 50676.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000239513 | |nearest_ensembl=ENSG00000239513 | ||
|nearest_promoter_id=NR_109987 | |nearest_promoter_id=NR_109987 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=137772076 | |start=137772076 |
Latest revision as of 17:52, 8 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D3490215,EH38E2241554) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 168 |
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Nearest PromoterID: | NR_109987 |
Entrez ID: | 100507274 |
Nearest Unigene: | Hs.360349 |
Nearest Refseq: | NR_109987 |
Nearest Ensembl: | ENSG00000239513 |
Gene Name: | LINC01210 |
Gene Alias: | - |
Gene Description: | long intergenic non-protein coding RNA 1210 |
Gene Type: | ncRNA |
CpG%: | 0.000000 |
GC%: | 0.375000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |