TSS: Rfhg 51438.1: Difference between revisions

Revision as of 18:06, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_51438.1
TSS ID(Version3):	hg_240058.1
Species:	human
Chr:	chr3

Start:	149377727
End:	149377732
Strand:	-

Source datasets

ENCODE|PRJNA615891|PRJNA548673

Protocol

CAGE|TIF-seq2|SLIC_CAGE|ReCappable-seq

TSS cluster detected^*

5

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3499237,EH38E2247169)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC034145:-10
GeneID:	4071
HGNC/MGI_ID:	HGNC:11853
UniProt_ID:	Q8NE91
Nearer transcript ids and distances:

Gene_name:	TM4SF1-AS1
Gene_symbol:	TM4SF1
Gene_synonyms:	L6
Gene_source:	HGNC:11853

TATA-Box annotation

Distance to TSS:	-49
Nearest PromoterID:	NR_109809
Entrez ID:	100874091
Nearest Unigene:	Hs.549633
Nearest Refseq:	NR_046650
Nearest Ensembl:	ENSG00000240541
Gene Name:	TM4SF1-AS1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:11853
+|methods=CAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000240541
 |nearest_promoter_id=NR_109809
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=ENCODE{{!}}PRJNA615891{{!}}PRJNA548673
 |species=human
 |start=149377727
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=BC034145
+|tss_cluster_detected=5
 |tss_id=rfhg_51438.1
 |tss_id_v3=hg_240058.1