TSS: Rfhg 52340.1: Difference between revisions

Revision as of 18:24, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_52340.1
Species:	human
Chr:	chr3

Start:	160565133
End:	160565147
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3508587,EH38E2253526)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000468527.1:300
GeneID:
HGNC/MGI_ID:	HGNC:28057
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	KPNA4
Gene_symbol:	KRT8P12
Gene_synonyms:
Gene_source:	HGNC:28057

TATA-Box annotation

Distance to TSS:	431
Nearest PromoterID:	NM_002268
Entrez ID:	3840
Nearest Unigene:	Hs.467866
Nearest Refseq:	NM_002268
Nearest Ensembl:	ENSG00000186432
Gene Name:	KPNA4
Gene Alias:	IPOA3\|QIP1\|SRP3
Gene Type:	protein-coding
CpG%:	0.071429
GC%:	0.533333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:28057
+|methods=CAGE
 |nearest_ensembl=ENSG00000186432
 |nearest_promoter_id=NM_002268
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=160565133