TSS: Rfhg 53270.1: Difference between revisions

Latest revision as of 18:41, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_53270.1
Species:	human
Chr:	chr3

Start:	181442505
End:	181442521
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000653745.1 ENST00000671626.1 ENST00000666802.1 ENST00000660625.1
Distance:	0
GeneID:
HGNC/MGI_ID:
UniProt_ID:

Gene_name:	LOC102724604
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-27
Nearest PromoterID:	NR_125407
Entrez ID:	102724604
Nearest Unigene:	Hs.570524
Nearest Refseq:	NR_125407
Nearest Ensembl:	ENSG00000241231
Gene Name:	LOC102724604
Gene Alias:	-
Gene Description:	uncharacterized LOC102724604
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.529412
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000241231
 |nearest_promoter_id=NR_125407
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=181442505