TSS: Rfhg 53290.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000181449
|nearest_ensembl=ENSG00000181449
|nearest_promoter_id=NM_003106
|nearest_promoter_id=NM_003106
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|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=181699773
|start=181699773

Latest revision as of 18:41, 8 December 2023

Basic information about the TSS


TSS ID:rfhg_53290.1
Species:human
Chr:chr3
Start:181699773
End:181699781
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3523521,EH38E2262635)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:SOX2
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-12148
Nearest PromoterID:NM_003106
Entrez ID:6657
Nearest Unigene:Hs.518438
Nearest Refseq:NM_003106
Nearest Ensembl:ENSG00000181449
Gene Name:SOX2
Gene Alias:ANOP3|MCOPS3
Gene Description:SRY-box transcription factor 2
Gene Type:protein-coding
CpG%:0.000000
GC%:0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):