TSS: Rfhg 53290.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000181449 | |nearest_ensembl=ENSG00000181449 | ||
|nearest_promoter_id=NM_003106 | |nearest_promoter_id=NM_003106 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=181699773 | |start=181699773 | ||
Latest revision as of 18:41, 8 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3523521,EH38E2262635) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -12148 |
|---|---|
| Nearest PromoterID: | NM_003106 |
| Entrez ID: | 6657 |
| Nearest Unigene: | Hs.518438 |
| Nearest Refseq: | NM_003106 |
| Nearest Ensembl: | ENSG00000181449 |
| Gene Name: | SOX2 |
| Gene Alias: | ANOP3|MCOPS3 |
| Gene Description: | SRY-box transcription factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.444444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |