TSS: Rfhg 53555.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:24004
|hgnc_mgi_id=HGNC:24004
|methods=NETCAGE
|nearest_ensembl=ENSG00000186090
|nearest_ensembl=ENSG00000186090
|nearest_promoter_id=NM_001163646
|nearest_promoter_id=NM_001163646
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=PRJNA4843412
|species=human
|species=human
|start=184032439
|start=184032439

Revision as of 18:46, 8 December 2023

Basic information about the TSS


TSS ID:rfhg_53555.1
Species:human
Chr:chr3
Start:184032439
End:184032442
Strand:+
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000382489.3:389
AJ437318:389
GeneID:200909
HGNC/MGI_ID:HGNC:24004
UniProt_ID:Q70Z44
Nearer transcript ids and distances:
    Gene_name:HTR3D
    Gene_symbol:HTR3D
    Gene_synonyms:
    Gene_source:HGNC:24004



    TATA-Box annotation


    Distance to TSS:-391
    Nearest PromoterID:NM_001163646
    Entrez ID:200909
    Nearest Unigene:Hs.448004
    Nearest Refseq:NM_182537
    Nearest Ensembl:ENSG00000186090
    Gene Name:HTR3D
    Gene Alias:5HT3D
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.250000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.