TSS: Rfhg 55831.1: Difference between revisions

Revision as of 19:28, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_55831.1
Species:	human
Chr:	chr4

Start:	7042931
End:	7043006
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3545719,EH38E2278794)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000310085.6:0 AK075056:0 BC112274:0 BC105055:0 HQ258308:0
GeneID:	257236
HGNC/MGI_ID:	HGNC:26900
UniProt_ID:	Q2M329
Nearer transcript ids and distances:

Gene_name:	CCDC96
Gene_symbol:	CCDC96
Gene_synonyms:	FLJ90575
Gene_source:	HGNC:26900

TATA-Box annotation

Distance to TSS:	33
Nearest PromoterID:	NM_153376
Entrez ID:	257236
Nearest Unigene:	Hs.656757
Nearest Refseq:	NM_153376
Nearest Ensembl:	ENSG00000173013
Gene Name:	CCDC96
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.106667
GC%:	0.684211
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:26900
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000173013
 |nearest_promoter_id=NM_153376
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=7042931