TSS: Rfhg 56721.1: Difference between revisions

Revision as of 19:44, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_56721.1
Species:	human
Chr:	chr4

Start:	26320752
End:	26320771
Strand:	+

Source datasets

FANTOM5|DBTSS

Protocol

CAGE|TSS-seq

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3560758,EH38E2287825)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AB527795:-4
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RBPJ
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-46
Nearest PromoterID:	NM_015874
Entrez ID:	3516
Nearest Unigene:	Hs.479396
Nearest Refseq:	NM_005349
Nearest Ensembl:	ENSG00000168214
Gene Name:	RBPJ
Gene Alias:	AOS3\|CBF1\|IGKJRB\|IGKJRB1\|KBF2\|RBP-J\|RBPJK\|RBPSUH\|SUH\|csl
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.650000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS-seq
 |nearest_ensembl=ENSG00000168214
 |nearest_promoter_id=NM_015874
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DBTSS
 |species=human
 |start=26320752