TSS: Rfhg 5871.1: Difference between revisions

Revision as of 20:21, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_5871.1
Species:	human
Chr:	chr1

Start:	42682144
End:	42682149
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2157487,EH38E1341856)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF356427:260 MA592004:260
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	YBX1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-272
Nearest PromoterID:	NM_004559
Entrez ID:	4904
Nearest Unigene:	Hs.473583
Nearest Refseq:	NM_004559
Nearest Ensembl:	ENSG00000065978
Gene Name:	YBX1
Gene Alias:	BP-8\|CBF-A\|CSDA2\|CSDB\|DBPB\|EFI-A\|MDR-NF1\|NSEP-1\|NSEP1\|YB-1\|YB1
Gene Type:	protein-coding
CpG%:	0.200000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000065978
 |nearest_promoter_id=NM_004559
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=42682144