TSS: Rfhg 60721.1: Difference between revisions

Revision as of 21:00, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_60721.1
Species:	human
Chr:	chr4

Start:	100871430
End:	100871512
Strand:	-

Source datasets

PRJNA401781

Protocol

RAMPAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3607800,EH38E2315744)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC01216
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-196358
Nearest PromoterID:	NR_046811
Entrez ID:	100874275
Nearest Unigene:	Hs.136318
Nearest Refseq:	NR_046811
Nearest Ensembl:	ENSG00000250223
Gene Name:	LINC01216
Gene Alias:	EMCN-IT3
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.578313
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=RAMPAGE
 |nearest_ensembl=ENSG00000250223
 |nearest_promoter_id=NR_046811
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781
 |species=human
 |start=100871430