TSS: Rfhg 62261.1: Difference between revisions

Revision as of 21:29, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_62261.1
Species:	human
Chr:	chr4

Start:	138305257
End:	138305274
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3631449,EH38E2329204)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC00499
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-4446
Nearest PromoterID:	NR_051987
Entrez ID:	100874047
Nearest Unigene:	Hs.570848
Nearest Refseq:	NR_051987
Nearest Ensembl:	ENSG00000251372
Gene Name:	LINC00499
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000251372
 |nearest_promoter_id=NR_051987
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=138305257