TSS: Rfhg 64189.1: Difference between revisions

Revision as of 22:05, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_64189.1
Species:	human
Chr:	chr4

Start:	173169494
End:	173169513
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3656146,EH38E2344265)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC040577:-139
GeneID:	101930370
HGNC/MGI_ID:	HGNC:55604
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC101930370
Gene_symbol:	GALNT7-DT
Gene_synonyms:
Gene_source:	HGNC:55604

TATA-Box annotation

Distance to TSS:	149
Nearest PromoterID:	NR_134241
Entrez ID:	101930370
Nearest Unigene:	Hs.563191
Nearest Refseq:	NR_134241
Nearest Ensembl:	ENSG00000245213
Gene Name:	LOC101930370
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.157895
GC%:	0.900000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:55604
+|methods=CAGE
 |nearest_ensembl=ENSG00000245213
 |nearest_promoter_id=NR_134241
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=173169494