TSS: Rfhg 6999.1: Difference between revisions

Revision as of 23:52, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_6999.1
TSS ID(Version3):	hg_12439.1 hg_12440.1
Species:	human
Chr:	chr1

Start:	53945568
End:	53945620
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

12

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000371378.6:0 ENST00000371377.3:0 ENST00000488884.1:0 AK225916:0 AF100747:0 BC005245:0
GeneID:	51668
HGNC/MGI_ID:	HGNC:25019
UniProt_ID:	A6NIR2 X6R7Y7
Nearer transcript ids and distances:

Gene_name:	HSPB11
Gene_symbol:	IFT25
Gene_synonyms:	CFAP232 FAP232 HSPCO34 PP25
Gene_source:	HGNC:25019

TATA-Box annotation

Distance to TSS:	229
Nearest PromoterID:	NR_133633
Entrez ID:	51668
Nearest Unigene:	Hs.525462
Nearest Refseq:	NM_016126
Nearest Ensembl:	ENSG00000081870
Gene Name:	HSPB11
Gene Alias:	C1orf41\|HSPCO34\|IFT25\|PP25
Gene Type:	protein-coding
CpG%:	0.115385
GC%:	0.735849
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25019
+|methods=CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}STRIPE-seq{{!}}oligo_capping{{!}}NETCAGE{{!}}C1CAGE{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000081870
 |nearest_promoter_id=NR_133633
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA597322{{!}}PRJNA4843412{{!}}PRJDB5282{{!}}DRA013844
 |species=human
 |start=53945568
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000371378.6 ENST00000371377.3 ENST00000488884.1 AK225916 AF100747 BC005245
+|tss_cluster_detected=12
 |tss_id=rfhg_6999.1
 |tss_id_v3=hg_12439.1;hg_12440.1