TSS: Rfhg 72004.1: Difference between revisions

Revision as of 00:31, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_72004.1
Species:	human
Chr:	chr5

Start:	132866769
End:	132866769
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3760099,EH38E2408915)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000624492.3:-115 ENST00000621295.4:-115 ENST00000472320.1:-115 AK315973:-115
GeneID:	2661
HGNC/MGI_ID:	HGNC:4224
UniProt_ID:	B4DXG3
Nearer transcript ids and distances:

Gene_name:	GDF9
Gene_symbol:	GDF9
Gene_synonyms:
Gene_source:	HGNC:4224

TATA-Box annotation

Distance to TSS:	115
Nearest PromoterID:	NM_001288825
Entrez ID:	2661
Nearest Unigene:	Hs.25022
Nearest Refseq:	NM_005260
Nearest Ensembl:	ENSG00000164404
Gene Name:	GDF9
Gene Alias:	POF14
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:4224
+|methods=TSS_database
 |nearest_ensembl=ENSG00000164404
 |nearest_promoter_id=NM_001288825
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=132866769