TSS: Rfhg 75896.1: Difference between revisions

Revision as of 01:41, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_75896.1
Species:	human
Chr:	chr5

Start:	172983821
End:	172983833
Strand:	-

Source datasets

ENCODE

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3794559,EH38E2432590)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ATP6V0E1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	56
Nearest PromoterID:	NM_003945
Entrez ID:	8992
Nearest Unigene:	Hs.484188
Nearest Refseq:	NM_003945
Nearest Ensembl:	ENSG00000113732
Gene Name:	ATP6V0E1
Gene Alias:	ATP6H\|ATP6V0E\|M9.2\|Vma21\|Vma21p
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.769231
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000113732
 |nearest_promoter_id=NM_003945
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=ENCODE
 |species=human
 |start=172983821