TSS: Rfhg 75896.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000113732
|nearest_ensembl=ENSG00000113732
|nearest_promoter_id=NM_003945
|nearest_promoter_id=NM_003945
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=ENCODE
|species=human
|species=human
|start=172983821
|start=172983821

Revision as of 01:41, 9 December 2023

Basic information about the TSS


TSS ID:rfhg_75896.1
Species:human
Chr:chr5
Start:172983821
End:172983833
Strand:-
Source datasetsENCODE
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3794559,EH38E2432590)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:ATP6V0E1
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:56
    Nearest PromoterID:NM_003945
    Entrez ID:8992
    Nearest Unigene:Hs.484188
    Nearest Refseq:NM_003945
    Nearest Ensembl:ENSG00000113732
    Gene Name:ATP6V0E1
    Gene Alias:ATP6H|ATP6V0E|M9.2|Vma21|Vma21p
    Gene Type:protein-coding
    CpG%:0.166667
    GC%:0.769231
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):