TSS: Rfhg 79315.1: Difference between revisions

Revision as of 02:44, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_79315.1
Species:	human
Chr:	chr6

Start:	26033844
End:	26033846
Strand:	-

Source datasets

PRJNA401781

Protocol

RAMPAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3826644,EH38E2455678)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000615868.2:226
GeneID:	8335
HGNC/MGI_ID:	HGNC:4734
UniProt_ID:	Q08AJ9
Nearer transcript ids and distances:

Gene_name:	HIST1H2AB
Gene_symbol:	H2AC4
Gene_synonyms:	H2A/m
Gene_source:	HGNC:4734

TATA-Box annotation

Distance to TSS:	-277
Nearest PromoterID:	NM_003513
Entrez ID:	8335
Nearest Unigene:	Hs.248174
Nearest Refseq:	NM_003513
Nearest Ensembl:	ENSG00000278463
Gene Name:	HIST1H2AB
Gene Alias:	H2A/m\|H2AFM
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:4734
+|methods=RAMPAGE
 |nearest_ensembl=ENSG00000278463
 |nearest_promoter_id=NM_003513
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781
 |species=human
 |start=26033844