|
|
| Line 21: |
Line 21: |
| |gene_type=protein-coding | | |gene_type=protein-coding |
| |hgnc_mgi_id=HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953 | | |hgnc_mgi_id=HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953 |
| | |methods=CAGE |
| |nearest_ensembl=ENSG00000196126 | | |nearest_ensembl=ENSG00000196126 |
| |nearest_promoter_id=NM_001243965 | | |nearest_promoter_id=NM_001243965 |
| Line 27: |
Line 28: |
| |peak_score=1 | | |peak_score=1 |
| |reftss_version=4 | | |reftss_version=4 |
| | |source_datasets=FANTOM5 |
| |species=human | | |species=human |
| |start=32589741 | | |start=32589741 |
Revision as of 03:18, 9 December 2023
Basic information about the TSS
| TSS ID: | rfhg_81181.1 |
|---|
| Species: | human |
|---|
| Chr: | chr6 |
|---|
| |
| Start: | 32589741 |
|---|
| End: | 32589763 |
|---|
| Strand: | - |
|---|
|
| Source datasets | FANTOM5 |
|---|
| Protocol | CAGE |
|---|
| TSS cluster detected* | 1 |
|---|
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
| Nearest transcript id and distance: | DQ284432:0
AF291675:0
AJ297586:0
AY961068:0
AY961075:0
HG974573:0
HG974575:0
HG974603:0
HM067845:0
HM067846:0
M30179:0
L02545:0
CU678949:0
EU375850:0
M11161:0
X99895:0
U84892:0
DQ284435:0
AJ697892:0
AJ697893:0
AJ297582:0
AJ297585:0
AJ297587:0
AJ302075:0
AY626551:0
AY770514:0
AY961062:0
AY961063:0
AY961064:0
AY961065:0
AY961066:0
AY961067:0
AY961069:0
AY961070:0
AY961071:0
AY961072:0
AY961073:0
AY961074:0
AY961076:0
AY961077:0
AY961078:0
DQ002917:0
DQ090958:0
GQ891551:0
HG974571:0
HG974572:0
HG974574:0
HG974576:0
HG974577:0
HG974578:0
HG974579:0
HG974580:0
HG974582:0
HG974583:0
HG974584:0
HG974585:0
HG974586:0
HG974587:0
HG974588:0
HG974589:0
HG974590:0
HG974591:0
HG974592:0
HG974595:0
HG974596:0
HG974597:0
HG974598:0
HG974599:0
HG974600:0
HG974601:0
HG974602:0
HG974604:0
HG974605:0
HM067843:0
HM067844:0
HM067847:0
HM067848:0
HM067849:0
HM067850:0
HM067852:0
HM067853:0
HM067854:0
HM067855:0
HM067856:0
HM067857:0
HM067858:0
HM067859:0
HM067860:0
HM067861:0
HM067862:0
HM067863:0
LK391771:0
LK391772:0
LK391773:0
LK391774:0
LK391775:0
LK391776:0
LK391777:0
LK391778:0
LK391779:0
LK391780:0
LK391781:0
LK391782:0
LK391783:0
LK391784:0
LM611904:0
LM611905:0
LN623522:0
LN830949:0
LN854575:0
LN854576:0
HQ447401:0
HQ447185:0
KJ534866:0
AB528619:0
AJ297583:0
AJ297584:0
AY935719:0
CU689080:0 |
|---|
| GeneID: | 3123 3125 3126 3127 |
|---|
| HGNC/MGI_ID: | HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953 |
|---|
| UniProt_ID: | A0A0A1I7P0 A0A0A1I7P2 A0A0A1I8N5 A0A0A1IBB2 A0A0A1IBB5 A0A0A8LC21 A0A0A8LC38 A0A0A8LC52 A0A0A8LDV8 A0A0A8LDW1 A0A0A8LDW7 A0A0A8LDY6 A0A0A8LDZ3 A0A0A8LE01 A0A0A8LE16 A0A0A8LE23 A0A0A8LE32 A0A0G4PYK8 A0A0G4PYZ0 A0A5K1TT61 A0A5K1TT63 A0A5K1TTE0 A0A5K1TTE4 A0A5K1TTE6 A0A5K1TTE7 A0A5K1TTI9 A0A5K1TTN8 P79552 Q2LIR3 Q30179 Q4ZJJ2 Q56FN4 Q56FN5 Q5XKU0 Q95462 Q95IH1 X5DNQ0 |
|---|
| Nearer transcript ids and distances: | |
|---|
| |
| Gene_name: | HLA-DRB1 |
|---|
| Gene_symbol: | HLA-DRB1 HLA-DRB3 HLA-DRB4 HLA-DRB5 |
|---|
| Gene_synonyms: | |
|---|
| Gene_source: | HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953 |
|---|
|
TATA-Box annotation
| Distance to TSS: | 84 |
|---|
| Nearest PromoterID: | NM_001243965 |
|---|
| Entrez ID: | 3123 |
|---|
| Nearest Unigene: | Hs.534322 |
|---|
| Nearest Refseq: | NM_002124 |
|---|
| Nearest Ensembl: | ENSG00000196126 |
|---|
| Gene Name: | HLA-DRB1 |
|---|
| Gene Alias: | DRB1|HLA-DR1B|HLA-DRB|SS1 |
|---|
| Gene Type: | protein-coding |
|---|
| CpG%: | 0.000000 |
|---|
| GC%: | 0.565217 |
|---|
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | |
|---|
TSS expression
Expression data not found.