TSS: Rfhg 81479.1: Difference between revisions

Revision as of 03:24, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_81479.1
TSS ID(Version3):	hg_67265.1
Species:	human
Chr:	chr6

Start:	33272048
End:	33272130
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

15

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3833016,EH38E2460504)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000474973.5:0 ENST00000439602.7:0 ENST00000474626.5:0 ENST00000476222.5:0 ENST00000496813.5:0 X69150:0 BC070230:0 AB055778:0 BC101786:0 BC101788:0 AY536376:0
GeneID:	6222
HGNC/MGI_ID:	HGNC:10401
UniProt_ID:	J3JS69 P62269
Nearer transcript ids and distances:

Gene_name:	RPS18
Gene_symbol:	RPS18
Gene_synonyms:	HKE3 KE-3 KE3 S18
Gene_source:	HGNC:10401

TATA-Box annotation

Distance to TSS:	14
Nearest PromoterID:	NM_022551
Entrez ID:	6222
Nearest Unigene:	Hs.448854
Nearest Refseq:	NM_022551
Nearest Ensembl:	ENSG00000231500
Gene Name:	RPS18
Gene Alias:	D6S218E\|HKE3\|KE-3\|KE3\|S18
Gene Type:	protein-coding
CpG%:	0.073171
GC%:	0.542169
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:10401
+|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}TIF-seq2{{!}}STRIPE-seq{{!}}NETCAGE{{!}}SLIC_CAGE{{!}}C1CAGE
 |nearest_ensembl=ENSG00000231500
 |nearest_promoter_id=NM_022551
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}RAMPAGE{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA597322{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282
 |species=human
 |start=33272048
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000474973.5 ENST00000439602.7 ENST00000474626.5 ENST00000476222.5 ENST00000496813.5 X69150 BC070230 AB055778 BC101786 BC101788 AY536376
+|tss_cluster_detected=15
 |tss_id=rfhg_81479.1
 |tss_id_v3=hg_67265.1