TSS: Rfhg 81540.1: Difference between revisions

Revision as of 03:26, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_81540.1
Species:	human
Chr:	chr6

Start:	33314563
End:	33314583
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3833078,EH38E2460557)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF210788:92 MA446365:92
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TAPBP
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-186
Nearest PromoterID:	NM_003190
Entrez ID:	6892
Nearest Unigene:	Hs.370937
Nearest Refseq:	NM_003190
Nearest Ensembl:	ENSG00000231925
Gene Name:	TAPBP
Gene Alias:	NGS17\|TAPA\|TPN\|TPSN
Gene Type:	protein-coding
CpG%:	0.050000
GC%:	0.476190
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000231925
 |nearest_promoter_id=NM_003190
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=33314563