TSS: Rfhg 86022.1: Difference between revisions

Revision as of 04:49, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_86022.1
Species:	human
Chr:	chr6

Start:	109826810
End:	109826810
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3884890,EH38E2493130)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000458693.1:-288
GeneID:	9896
HGNC/MGI_ID:	HGNC:16873
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	FIG4
Gene_symbol:	FIG4
Gene_synonyms:	ALS11 CMT4J SAC3 dJ249I4.1 hSac3
Gene_source:	HGNC:16873

TATA-Box annotation

Distance to TSS:	135589
Nearest PromoterID:	NM_014845
Entrez ID:	9896
Nearest Unigene:	Hs.529959
Nearest Refseq:	NM_014845
Nearest Ensembl:	ENSG00000112367
Gene Name:	FIG4
Gene Alias:	ALS11\|BTOP\|CMT4J\|KIAA0274\|SAC3\|YVS\|dJ249I4.1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16873
+|methods=C1CAGE
 |nearest_ensembl=ENSG00000112367
 |nearest_promoter_id=NM_014845
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282
 |species=human
 |start=109826810