TSS: Rfhg 87053.1: Difference between revisions

Revision as of 05:08, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_87053.1
Species:	human
Chr:	chr6

Start:	127519309
End:	127519362
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3897688,EH38E2501342)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_174482.1:0 NM_001400265.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SOGA3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-311
Nearest PromoterID:	NM_001012279
Entrez ID:	387104
Nearest Unigene:	Hs.319247
Nearest Refseq:	NM_001012279
Nearest Ensembl:	ENSG00000255330
Gene Name:	SOGA3
Gene Alias:	C6orf174\|dJ403A15.3
Gene Type:	protein-coding
CpG%:	0.018868
GC%:	0.537037
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000255330
 |nearest_promoter_id=NM_001012279
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=127519309