TSS: Rfhg 9072.1: Difference between revisions

Revision as of 06:16, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_9072.1
Species:	human
Chr:	chr1

Start:	89995103
End:	89995186
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2195331,EH38E1366371)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000340281.9:0 ENST00000394583.7:0 ENST00000361911.9:0 ENST00000370447.3:0 BC052645:0 BC061521:0 BC038454:0 BC090866:0 AK000410:0 BC053888:0 BC014899:0 BC070341:0 BC013102:0 AK303707:0 AK297073:0
GeneID:	284695
HGNC/MGI_ID:	HGNC:14104
UniProt_ID:	A0A0A0MRN4 E2QRN4 Q5BKZ1
Nearer transcript ids and distances:

Gene_name:	ZNF326
Gene_symbol:	ZNF326
Gene_synonyms:	FLJ20403 ZAN75 ZIRD Zfp326
Gene_source:	HGNC:14104

TATA-Box annotation

Distance to TSS:	34
Nearest PromoterID:	NM_181781
Entrez ID:	284695
Nearest Unigene:	Hs.306221
Nearest Refseq:	NM_181781
Nearest Ensembl:	ENSG00000162664
Gene Name:	ZNF326
Gene Alias:	ZAN75\|ZIRD\|Zfp326\|dJ871E2.1
Gene Type:	protein-coding
CpG%:	0.156627
GC%:	0.738095
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:14104
+|methods=CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}NETCAGE{{!}}TIF-seq2{{!}}oligo_capping{{!}}RAMPAGE{{!}}STRIPE-seq
 |nearest_ensembl=ENSG00000162664
 |nearest_promoter_id=NM_181781
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322
 |species=human
 |start=89995103
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000340281.9 ENST00000394583.7 ENST00000361911.9 ENST00000370447.3 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073
-|tss_cluster_detected=14
+|tss_cluster_detected=11
 |tss_id=rfhg_9072.1
 |tss_score=1
 |uniprot_id=A0A0A0MRN4 E2QRN4 Q5BKZ1
 }}