TSS: Rfhg 94349.1: Difference between revisions

Revision as of 07:20, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_94349.1
Species:	human
Chr:	chr7

Start:	46759849
End:	46759859
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3975381,EH38E2554638)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000487094.1:0
GeneID:	730338
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC730338
Gene_symbol:	LOC730338
Gene_synonyms:
Gene_source:	EntrezGene:730338

TATA-Box annotation

Distance to TSS:	-62732
Nearest PromoterID:	NR_134575
Entrez ID:	730338
Nearest Unigene:	Hs.640207
Nearest Refseq:	NR_134575
Nearest Ensembl:	ENSG00000233539
Gene Name:	LOC730338
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000233539
 |nearest_promoter_id=NR_134575
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=46759849