TSS: Rfhg 94458.1: Difference between revisions

Revision as of 07:22, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_94458.1
Species:	human
Chr:	chr7

Start:	47621683
End:	47621742
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3976349,EH38E2555366)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC01447
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-227
Nearest PromoterID:	NR_108090
Entrez ID:	101929086
Nearest Unigene:	Hs.563487
Nearest Refseq:	NR_108090
Nearest Ensembl:	ENSG00000236078
Gene Name:	LINC01447
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.016949
GC%:	0.516667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=NETCAGE
 |nearest_ensembl=ENSG00000236078
 |nearest_promoter_id=NR_108090
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412
 |species=human
 |start=47621683