TSS: Rfhg 96340.1: Difference between revisions

Revision as of 07:57, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_96340.1
Species:	human
Chr:	chr7

Start:	90346669
End:	90346738
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4000434,EH38E2570336)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000417207.5:0 ENST00000477972.1:0 ENST00000380058.7:0 ENST00000222511.11:0 ENST00000439832.5:0 AK095561:0 BC107714:0 CR933597:0 AK294325:0 BC144162:0
GeneID:	85865
HGNC/MGI_ID:	HGNC:25106
UniProt_ID:	A4D1E9 C9JEQ8 F8WCN4
Nearer transcript ids and distances:

Gene_name:	GTPBP10
Gene_symbol:	GTPBP10
Gene_synonyms:	DKFZP686A10121 FLJ38242 OBGH2
Gene_source:	HGNC:25106

TATA-Box annotation

Distance to TSS:	-13
Nearest PromoterID:	NM_033107
Entrez ID:	85865
Nearest Unigene:	Hs.593547
Nearest Refseq:	NM_033107
Nearest Ensembl:	ENSG00000105793
Gene Name:	GTPBP10
Gene Alias:	ObgH2\|UG0751c10
Gene Type:	protein-coding
CpG%:	0.086957
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25106
+|methods=NETCAGE{{!}}CAGE{{!}}ReCappable-seq{{!}}C1CAGE{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000105793
 |nearest_promoter_id=NM_033107
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJDB5282{{!}}PRJNA401781{{!}}PRJNA615891
 |species=human
 |start=90346669
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000417207.5 ENST00000477972.1 ENST00000380058.7 ENST00000222511.11 ENST00000439832.5 AK095561 BC107714 CR933597 AK294325 BC144162
-|tss_cluster_detected=13
+|tss_cluster_detected=10
 |tss_id=rfhg_96340.1
 |tss_score=1
 |uniprot_id=A4D1E9 C9JEQ8 F8WCN4
 }}