TSS: Rfhg 98016.1: Difference between revisions

Revision as of 08:27, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_98016.1
Species:	human
Chr:	chr7

Start:	102616751
End:	102616757
Strand:	-

Source datasets

EPD|DRA000914

Protocol

TSS_database|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000262940.12:0 ENST00000449970.6:0 ENST00000523568.5:0 ENST00000521892.1:0
GeneID:	10156
HGNC/MGI_ID:	HGNC:23181
UniProt_ID:	O43374
Nearer transcript ids and distances:

Gene_name:	RASA4B
Gene_symbol:	RASA4
Gene_synonyms:	CAPRI GAPL KIAA0538
Gene_source:	HGNC:23181

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_001367767
Entrez ID:	100271927
Nearest Unigene:	Hs.530089
Nearest Refseq:	NM_001277335
Nearest Ensembl:	ENSG00000170667
Gene Name:	RASA4B
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:23181
+|methods=TSS_database{{!}}CAGE
 |nearest_ensembl=ENSG00000170667
 |nearest_promoter_id=NM_001367767
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD{{!}}DRA000914
 |species=human
 |start=102616751